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10   <title>antiSMASH: Searching for New Antibiotics Using Open Source Tools</title>
11
12   <meta name="description" content="A presentation of the antiSMASH software for Linux.Conf.AU 2012">
13   <meta name="author" content="Kai Blin">
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38 <header>
39  <p>antiSMASH: Searching for New Antibiotics Using Open Source Tools</p>
40 </header>
41
42 <article class="deck-container">
43
44 <section class="slide" id="title-slide">
45   <div id="title-slide-logo">
46     <img height="10%" src="antismash_logo.svg">
47   </div>
48   <div id="subtitle">
49     <h4>An Antibiotics and Secondary Metabolites Analysis Shell</h4>
50     Kai Blin<br>
51     Division for Microbiology/Biotechnology
52   </div>
53   </section>
54
55   <section class="slide" id="background">
56   <h1>Biological Background</h2>
57   </section>
58
59   <section class="slide" id="background-definition">
60     <h2>Biotechnology - Definition</h2>
61
62     <blockquote cite="http://www.cbd.int/convention/articles/?a=cbd-02">
63         [...] any <span id="definition-technological">technological application</span>
64         that uses <span id="definition-biological">biological systems, living organisms,
65         or derivatives thereof</span>, to make or modify
66         <span id="definition-products">products or processes</span> for specific use.
67     </blockquote>
68     <cite>The UN Convention on Biological Diversity</cite>
69     <div class="slide" id="background-definition-technological"></div>
70     <div class="slide" id="background-definition-biological"></div>
71     <div class="slide" id="background-definition-products"></div>
72   </section>
73
74
75
76   <section class="slide" id="cell-animation-begin">
77     <h2>Cell</h2>
78     <div id="cell-canvas"></div>
79     <div class="slide" id="cell-animation-factory"></div>
80   </section>
81
82   <section class="slide" id="background-example-beer">
83     <img src="beer.jpg">
84   </section>
85
86   <section class="slide" id="background-example-insulin">
87     <img src="insulin.jpg">
88   </section>
89
90   <section class="slide" id="bacteria-animation-begin">
91     <h2>Biofactories</h2>
92     <div id="bacteria-canvas"></div>
93     <div class="slide" id="bacteria-animation-grow"></div>
94   </section>
95
96   <section class="slide" id="background-metaphor-machines">
97   <img src="protein_metaphor.svg" height="300">
98   <div class="float-left-small">
99       <div class="slide" id="enzymes"><img src="protein_reaction.svg"></div>
100       <div class="slide" id="sensors"><img src="protein_sensor.svg"></div>
101       <div class="slide" id="regulators"><img src="protein_regulator.svg"></div>
102       <div class="slide" id="ribosomes"><img src="protein_ribosome.svg"></div>
103   </section>
104
105   <section class="slide" id="background-metaphor-gene-tools">
106     <img src="a_lot_of_proteins.svg">
107   </section>
108
109   <section class="slide" id="background-metaphor-gene-blueprint">
110     <img src="blueprint.svg" height="600">
111     <h3 class="centered">Gene</h3>
112   </section>
113
114   <section class="slide" id="background-protein-vs-enzyme">
115   <h2>Nomenclature</h2>
116   <div class="float-left-large">
117     <div class="slide" id="when-protein"><img src="protein_parts.svg"></div>
118     <div class="slide" id="when-enzyme"><img src="protein_reaction.svg"></div>
119   </div>
120   </section>
121
122   <section class="slide" id="background-metaphor-assembly">
123     DNA --copy-&gt; mRNA --ribosome-&gt; Protein
124   </section>
125
126   <section class="slide" id="background-glossary">
127   <ul>
128     <li>Primary Metabolism</li>
129     <li>Secondary Metabolism</li>
130     <li>Gene cluster</li>
131     <li>Antibiotics</li>
132   </ul>
133   </section>
134
135   <section class="slide" id="background-why-antibiotics">
136   <h2>Why do we need more antibiotics?</h2>
137   </section>
138
139
140
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159 </article>
160 <footer>
161 <div id="affiliation">Interfakutäres Intstitut für Mikrobiologie und
162 Infektionsmedizin Tübingen (IMIT)
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